PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_136F5F731.1
Common NameTRAES_3BF041800040CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 79aa    MW: 8591.55 Da    PI: 6.2309
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_136F5F731.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB353.3e-111277197
                  NF-YB 71 latlGfedyveplkvylkkyrelegek 97
                           +atlGfe+yv+plk+yl+kyr++eg++
  Traes_3DL_136F5F731.1  1 MATLGFEEYVDPLKIYLQKYRDMEGDS 27
                           89***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-7137IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MATLGFEEYV DPLKIYLQKY RDMEGDSKLT SKSGEGSVKK DIIGAHSGAT SSNAQAMVQH  60
GAYAQGMGYM QPQYHNGDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0093931e-131BT009393.1 Triticum aestivum clone wlm96.pk037.k9:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232523.12e-47PREDICTED: nuclear transcription factor Y subunit B-3
RefseqXP_003564550.12e-47PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotP252093e-38NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A077S2002e-52A0A077S200_WHEAT; Uncharacterized protein
TrEMBLW5D7Y88e-53W5D7Y8_WHEAT; Uncharacterized protein
STRINGMLOC_72428.43e-50(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.18e-17nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]